OncoPrinter

generates Oncoprints from you own data (v1.0.1)

Please input tab-delimited genomic alteration events. Data format

Data format

The data should contain three tab-delimited columns. The first row is a header row, which contains: Sample Gene Alteration Type. Each following row contains a single genomic event in a single sample. You can also list samples without any events at the end of the list so that the percentages can be properly calculated. Note: Any row which has an entry in the Gene (2nd) column must also have an entry in the Alteration (3rd) and Type (4th) columns

Sample: Sample ID
Gene: Gene symbol (or other gene identifier)
Alteration: Definition of the alteration event
- Mutation event: amino acid change or any other information about the mutation
- Fusion event: fusion information
- Copy number alteration (CNA) - please use one of the four events below:
  - AMP: high level amplification
  - GAIN: low level gain
  - HETLOSS: shallow deletion
  - HOMDEL: deep deletion
- mRNA expression - please use one of the two events below:
  - UP: expression up
  - DOWN: expression down
- Protein expression - please use one of the two events below:
  - PROT-UP: RPPA Upregulation
  - PROT-DOWN: RPPA Downregulation
Type: Definition of the alteration type. It has to be one of the following.
- For a mutation event, please use one of the three mutation types below:
  - MISSENSE: a missense mutation
  - INFRAME: a inframe mutation
  - TRUNC: a truncation mutation
- FUSION: a fusion event
- CNA: a copy number alteration event
- EXP: a expression event
- PROT: a protein expression event

Input Mutation Data Load example data	Input Clinical Data Load example data
Input Mutation Data File	Input Clinical Data File

Please define the order of genes (optional).

Please define the order of samples (optional).